Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-Aiptasia_pallida-1.1 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1990-SSB01_symbiotic-Aiptasia_pallida-1.1 -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                
Sequenced Read Pairs:  83,376,742
 Normal Paired: 38,446,504 (46.11%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 44,930,238 (53.89%)
 Ligation Motif Present: 73,489 (0.09%)
Alignable (Normal+Chimeric Paired): 38,446,504 (46.11%)
Unique Reads: 33,683,616 (40.40%)
PCR Duplicates: 4,753,054 (5.70%)
Optical Duplicates: 9,834 (0.01%)
Library Complexity Estimate: 142,318,231
Intra-fragment Reads: 11,138,608 (13.36% / 33.07%)
Below MAPQ Threshold: 13,337,398 (16.00% / 39.60%)
Hi-C Contacts: 9,207,610 (11.04% / 27.34%)
 Ligation Motif Present: 15,056  (0.02% / 0.04%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,354,116  (5.22% / 12.93%)
Intra-chromosomal: 4,853,494  (5.82% / 14.41%)
Short Range (<20Kb): 4,251,945  (5.10% / 12.62%)
Long Range (>20Kb): 601,512  (0.72% / 1.79%)