Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1983-OS08_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1983-OS08_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  129,450,366
 Normal Paired: 96,945,443 (74.89%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 32,504,923 (25.11%)
 Ligation Motif Present: 23,526,940 (18.17%)
Alignable (Normal+Chimeric Paired): 96,945,443 (74.89%)
Unique Reads: 94,211,688 (72.78%)
PCR Duplicates: 2,688,567 (2.08%)
Optical Duplicates: 45,188 (0.03%)
Library Complexity Estimate: 1,713,768,388
Intra-fragment Reads: 849,571 (0.66% / 0.90%)
Below MAPQ Threshold: 36,471,863 (28.17% / 38.71%)
Hi-C Contacts: 56,890,254 (43.95% / 60.39%)
 Ligation Motif Present: 2,976,753  (2.30% / 3.16%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,432,078  (6.51% / 8.95%)
Intra-chromosomal: 48,458,176  (37.43% / 51.44%)
Short Range (<20Kb): 21,432,038  (16.56% / 22.75%)
Long Range (>20Kb): 27,026,118  (20.88% / 28.69%)