Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1983-OS08_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-02-10-NextSeq/juicer-L1983-OS08_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  129,450,366
 Normal Paired: 96,945,443 (74.89%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 32,504,923 (25.11%)
 Ligation Motif Present: 23,526,940 (18.17%)
Alignable (Normal+Chimeric Paired): 96,945,443 (74.89%)
Unique Reads: 94,211,688 (72.78%)
PCR Duplicates: 2,688,567 (2.08%)
Optical Duplicates: 45,188 (0.03%)
Library Complexity Estimate: 1,713,768,388
Intra-fragment Reads: 849,571 (0.66% / 0.90%)
Below MAPQ Threshold: 27,456,154 (21.21% / 29.14%)
Hi-C Contacts: 65,905,963 (50.91% / 69.96%)
 Ligation Motif Present: 3,536,477  (2.73% / 3.75%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,574,812  (8.17% / 11.22%)
Intra-chromosomal: 55,331,151  (42.74% / 58.73%)
Short Range (<20Kb): 24,271,722  (18.75% / 25.76%)
Long Range (>20Kb): 31,059,399  (23.99% / 32.97%)