Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  1,661,718,554
 Normal Paired: 781,726,871 (47.04%)
 Chimeric Paired: 561,247,875 (33.78%)
 Chimeric Ambiguous: 279,007,148 (16.79%)
 Unmapped: 39,736,660 (2.39%)
 Ligation Motif Present: 1,196,529,022 (72.01%)
Alignable (Normal+Chimeric Paired): 1,342,974,746 (80.82%)
Unique Reads: 863,104,658 (51.94%)
PCR Duplicates: 466,924,460 (28.10%)
Optical Duplicates: 12,945,628 (0.78%)
Library Complexity Estimate: 1,418,602,167
Intra-fragment Reads: 9,671,381 (0.58% / 1.12%)
Below MAPQ Threshold: 180,748,098 (10.88% / 20.94%)
Hi-C Contacts: 672,685,179 (40.48% / 77.94%)
 Ligation Motif Present: 332,049,705  (19.98% / 38.47%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 82,907,112  (4.99% / 9.61%)
Intra-chromosomal: 589,778,067  (35.49% / 68.33%)
Short Range (<20Kb): 328,255,987  (19.75% / 38.03%)
Long Range (>20Kb): 261,521,860  (15.74% / 30.30%)