Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1983-OS08_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  1,661,718,554
 Normal Paired: 781,726,871 (47.04%)
 Chimeric Paired: 561,247,875 (33.78%)
 Chimeric Ambiguous: 279,007,148 (16.79%)
 Unmapped: 39,736,660 (2.39%)
 Ligation Motif Present: 1,196,529,022 (72.01%)
Alignable (Normal+Chimeric Paired): 1,342,974,746 (80.82%)
Unique Reads: 863,104,658 (51.94%)
PCR Duplicates: 466,924,460 (28.10%)
Optical Duplicates: 12,945,628 (0.78%)
Library Complexity Estimate: 1,418,602,167
Intra-fragment Reads: 9,671,381 (0.58% / 1.12%)
Below MAPQ Threshold: 100,196,507 (6.03% / 11.61%)
Hi-C Contacts: 753,236,770 (45.33% / 87.27%)
 Ligation Motif Present: 359,946,296  (21.66% / 41.70%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 100,541,922  (6.05% / 11.65%)
Intra-chromosomal: 652,694,848  (39.28% / 75.62%)
Short Range (<20Kb): 356,469,800  (21.45% / 41.30%)
Long Range (>20Kb): 296,224,740  (17.83% / 34.32%)