Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1973-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1973-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  128,076,863
 Normal Paired: 122,552,936 (95.69%)
 Chimeric Paired: 377,743 (0.29%)
 Chimeric Ambiguous: 299,642 (0.23%)
 Unmapped: 4,846,542 (3.78%)
 Ligation Motif Present: 591,007 (0.46%)
Alignable (Normal+Chimeric Paired): 122,930,679 (95.98%)
Unique Reads: 101,914,840 (79.57%)
PCR Duplicates: 20,923,192 (16.34%)
Optical Duplicates: 92,647 (0.07%)
Library Complexity Estimate: 318,357,351
Intra-fragment Reads: 52,375,781 (40.89% / 51.39%)
Below MAPQ Threshold: 13,398,259 (10.46% / 13.15%)
Hi-C Contacts: 36,140,800 (28.22% / 35.46%)
 Ligation Motif Present: 336,151  (0.26% / 0.33%)
 3' Bias (Long Range): 30% - 70%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,615,692  (1.26% / 1.59%)
Intra-chromosomal: 34,525,108  (26.96% / 33.88%)
Short Range (<20Kb): 34,118,786  (26.64% / 33.48%)
Long Range (>20Kb): 406,277  (0.32% / 0.40%)