Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-10-27-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-10-27-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38 -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  288,352,931
 Normal Paired: 253,796,362 (88.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 34,556,569 (11.98%)
 Ligation Motif Present: 10,983,074 (3.81%)
Alignable (Normal+Chimeric Paired): 253,796,362 (88.02%)
Unique Reads: 175,181,879 (60.75%)
PCR Duplicates: 78,215,615 (27.12%)
Optical Duplicates: 398,868 (0.14%)
Library Complexity Estimate: 320,751,762
Intra-fragment Reads: 32,128,154 (11.14% / 18.34%)
Below MAPQ Threshold: 68,497,589 (23.75% / 39.10%)
Hi-C Contacts: 74,556,136 (25.86% / 42.56%)
 Ligation Motif Present: 861,681  (0.30% / 0.49%)
 3' Bias (Long Range): 56% - 44%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,657,769  (2.31% / 3.80%)
Intra-chromosomal: 67,898,367  (23.55% / 38.76%)
Short Range (<20Kb): 55,034,930  (19.09% / 31.42%)
Long Range (>20Kb): 12,862,773  (4.46% / 7.34%)