Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-10-27-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-10-27-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38 -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  288,352,931
 Normal Paired: 253,796,362 (88.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 34,556,569 (11.98%)
 Ligation Motif Present: 10,983,074 (3.81%)
Alignable (Normal+Chimeric Paired): 253,796,362 (88.02%)
Unique Reads: 175,181,879 (60.75%)
PCR Duplicates: 78,215,615 (27.12%)
Optical Duplicates: 398,868 (0.14%)
Library Complexity Estimate: 320,751,762
Intra-fragment Reads: 32,128,154 (11.14% / 18.34%)
Below MAPQ Threshold: 49,094,815 (17.03% / 28.03%)
Hi-C Contacts: 93,958,910 (32.58% / 53.64%)
 Ligation Motif Present: 1,146,983  (0.40% / 0.65%)
 3' Bias (Long Range): 56% - 44%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,487,932  (3.29% / 5.42%)
Intra-chromosomal: 84,470,978  (29.29% / 48.22%)
Short Range (<20Kb): 67,413,763  (23.38% / 38.48%)
Long Range (>20Kb): 17,056,409  (5.92% / 9.74%)