Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-11-01-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38-additional_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-11-01-NextSeq-run/juicer-L1885-OS89_Hi-C-hg38-additional_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  367,693,842
 Normal Paired: 320,587,220 (87.19%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 47,106,622 (12.81%)
 Ligation Motif Present: 14,126,566 (3.84%)
Alignable (Normal+Chimeric Paired): 320,587,220 (87.19%)
Unique Reads: 208,706,353 (56.76%)
PCR Duplicates: 111,467,012 (30.32%)
Optical Duplicates: 413,855 (0.11%)
Library Complexity Estimate: 345,398,214
Intra-fragment Reads: 38,247,971 (10.40% / 18.33%)
Below MAPQ Threshold: 59,254,345 (16.12% / 28.39%)
Hi-C Contacts: 111,204,037 (30.24% / 53.28%)
 Ligation Motif Present: 1,516,485  (0.41% / 0.73%)
 3' Bias (Long Range): 56% - 44%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,417,240  (3.11% / 5.47%)
Intra-chromosomal: 99,786,797  (27.14% / 47.81%)
Short Range (<20Kb): 79,492,220  (21.62% / 38.09%)
Long Range (>20Kb): 20,293,644  (5.52% / 9.72%)