Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1885-OS89_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1885-OS89_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  808,424,570
 Normal Paired: 683,384,257 (84.53%)
 Chimeric Paired: 53,363,597 (6.60%)
 Chimeric Ambiguous: 22,769,969 (2.82%)
 Unmapped: 48,906,747 (6.05%)
 Ligation Motif Present: 90,121,823 (11.15%)
Alignable (Normal+Chimeric Paired): 736,747,854 (91.13%)
Unique Reads: 357,296,078 (44.20%)
PCR Duplicates: 375,841,757 (46.49%)
Optical Duplicates: 3,610,019 (0.45%)
Library Complexity Estimate: 440,884,218
Intra-fragment Reads: 63,335,112 (7.83% / 17.73%)
Below MAPQ Threshold: 106,415,345 (13.16% / 29.78%)
Hi-C Contacts: 187,545,621 (23.20% / 52.49%)
 Ligation Motif Present: 18,251,699  (2.26% / 5.11%)
 3' Bias (Long Range): 52% - 48%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 16,424,074  (2.03% / 4.60%)
Intra-chromosomal: 171,121,547  (21.17% / 47.89%)
Short Range (<20Kb): 141,062,295  (17.45% / 39.48%)
Long Range (>20Kb): 30,057,906  (3.72% / 8.41%)