Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1885-OS89_Hi-C-all_reads -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2022-01-22-Novogene-OS-NovaSeq/juicer-L1885-OS89_Hi-C-all_reads -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  808,424,570
 Normal Paired: 683,384,257 (84.53%)
 Chimeric Paired: 53,363,597 (6.60%)
 Chimeric Ambiguous: 22,769,969 (2.82%)
 Unmapped: 48,906,747 (6.05%)
 Ligation Motif Present: 90,121,823 (11.15%)
Alignable (Normal+Chimeric Paired): 736,747,854 (91.13%)
Unique Reads: 357,296,078 (44.20%)
PCR Duplicates: 375,841,757 (46.49%)
Optical Duplicates: 3,610,019 (0.45%)
Library Complexity Estimate: 440,884,218
Intra-fragment Reads: 63,335,112 (7.83% / 17.73%)
Below MAPQ Threshold: 73,394,176 (9.08% / 20.54%)
Hi-C Contacts: 220,566,790 (27.28% / 61.73%)
 Ligation Motif Present: 20,482,299  (2.53% / 5.73%)
 3' Bias (Long Range): 53% - 47%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 22,140,422  (2.74% / 6.20%)
Intra-chromosomal: 198,426,368  (24.54% / 55.54%)
Short Range (<20Kb): 161,043,238  (19.92% / 45.07%)
Long Range (>20Kb): 37,381,509  (4.62% / 10.46%)