Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-07-14-NextSeq-run/juicer-L1620-Polarella_glacialis_CCMP2088-Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-07-14-NextSeq-run/juicer-L1620-Polarella_glacialis_CCMP2088-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Polarella_glacialis_CCMP2088/Polarella_glacialis_CCMP2088_GenomeScaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Polarella_glacialis_CCMP2088/bwa-indexes/Polarella_glacialis_CCMP2088_GenomeScaffolds.fa                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  199,017,253
 Normal Paired: 145,089,349 (72.90%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 53,927,904 (27.10%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 145,089,349 (72.90%)
Unique Reads: 136,979,103 (68.83%)
PCR Duplicates: 8,049,683 (4.04%)
Optical Duplicates: 60,563 (0.03%)
Library Complexity Estimate: 1,257,666,743
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 126,948,540 (63.79% / 92.68%)
Hi-C Contacts: 10,030,563 (5.04% / 7.32%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,622,805  (3.33% / 4.83%)
Intra-chromosomal: 3,407,758  (1.71% / 2.49%)
Short Range (<20Kb): 2,986,565  (1.50% / 2.18%)
Long Range (>20Kb): 420,729  (0.21% / 0.31%)