Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_40"; scripts/juicer.sh -t 20 -D /srv/scratch/marinovg/juicer-L1523-Killifish-Hi-C-main-only -d /srv/scratch/marinovg/juicer-L1523-Killifish-Hi-C-main-only -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Fishes/Nothobranchius_furzeri-Nfu_20140520/GCA_001465895.2_Nfu_20140520_genomic.main-only.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Fishes/Nothobranchius_furzeri-Nfu_20140520/bwa-indexes/GCA_001465895.2_Nfu_20140520_genomic.fa                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  387,199,140
 Normal Paired: 241,067,156 (62.26%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 146,131,984 (37.74%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 241,067,156 (62.26%)
Unique Reads: 184,173,556 (47.57%)
PCR Duplicates: 56,839,269 (14.68%)
Optical Duplicates: 54,331 (0.01%)
Library Complexity Estimate: 427,009,247
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 111,436,525 (28.78% / 60.51%)
Hi-C Contacts: 72,737,031 (18.79% / 39.49%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 28,181,927  (7.28% / 15.30%)
Intra-chromosomal: 44,555,104  (11.51% / 24.19%)
Short Range (<20Kb): 16,268,963  (4.20% / 8.83%)
Long Range (>20Kb): 28,283,330  (7.30% / 15.36%)