Index of /kundaje/marinovg/oak/various/ENCODE4/datasets-Hi-C/L1523-Killifish-Hi-C/juicer-L1523-Killifish-Hi-C-all_reads_final_assembly-3D_DNA-rounds5-repeat-coverage1000

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0.asm2021-05-21 16:48 13K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0.assembly2021-05-21 16:50 87K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0.cprops2021-05-21 08:43 71K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0.hic2021-05-21 17:53 939M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0_asm.scaffold_track.txt2021-05-21 16:50 342K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.0_asm.superscaf_track.txt2021-05-21 16:50 67K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1.asm2021-05-21 21:01 15K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1.assembly2021-05-21 21:05 129K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1.cprops2021-05-21 18:03 110K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1.hic2021-05-21 22:11 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1_asm.scaffold_track.txt2021-05-21 21:05 455K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.1_asm.superscaf_track.txt2021-05-21 21:05 221K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2.asm2021-05-22 00:48 16K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2.assembly2021-05-22 00:51 137K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2.cprops2021-05-21 22:21 118K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2.hic2021-05-22 01:55 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2_asm.scaffold_track.txt2021-05-22 00:51 475K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.2_asm.superscaf_track.txt2021-05-22 00:51 251K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3.asm2021-05-22 04:24 16K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3.assembly2021-05-22 04:26 142K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3.cprops2021-05-22 02:04 123K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3.hic2021-05-22 05:31 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3_asm.scaffold_track.txt2021-05-22 04:26 489K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.3_asm.superscaf_track.txt2021-05-22 04:26 266K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4.asm2021-05-22 07:32 17K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4.assembly2021-05-22 07:35 147K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4.cprops2021-05-22 05:41 127K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4.hic2021-05-22 08:41 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4_asm.scaffold_track.txt2021-05-22 07:35 501K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.4_asm.superscaf_track.txt2021-05-22 07:35 279K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5.asm2021-05-22 10:50 17K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5.assembly2021-05-22 10:53 150K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5.cprops2021-05-22 08:50 130K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5.hic2021-05-22 12:03 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5_asm.scaffold_track.txt2021-05-22 10:53 510K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.5_asm.superscaf_track.txt2021-05-22 10:53 288K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.FINAL.assembly2021-05-22 17:20 136K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.FINAL.fasta2021-05-22 17:20 1.2G 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.FINAL.hic2021-05-22 18:53 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.FINAL_asm.scaffold_track.txt2021-05-22 17:36 445K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.FINAL_asm.superscaf_track.txt2021-05-22 17:36 253K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.cprops2021-05-21 08:43 71K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.edits.txt2021-05-22 08:50 162K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.final.asm2021-05-22 15:37 15K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.final.assembly2021-05-22 15:53 126K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.final.cprops2021-05-22 15:37 108K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.final.fasta2021-05-22 17:04 1.2G 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.final.hic2021-05-22 17:03 936M 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.asm2021-05-22 12:42 17K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.cprops2021-05-22 12:14 130K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.depletion_score_narrow.wig2021-05-22 12:14 16M 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.depletion_score_wide.wig2021-05-22 12:05 202K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.edits_2D.txt2021-05-22 12:14 1.7K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.hic2021-05-22 13:56 937M 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.mismatch_narrow.bed2021-05-22 12:14 2.5K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.mismatch_wide.bed2021-05-22 12:05 782  
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.mismatches_2D.txt2021-05-22 12:14 5.9K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.assembly2021-05-22 14:29 151K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.depletion_score_narrow.wig2021-05-22 14:07 16M 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.depletion_score_wide.wig2021-05-22 13:58 203K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.edits_2D.txt2021-05-22 14:07 507  
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.mismatch_narrow.bed2021-05-22 14:07 2.4K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.mismatch_wide.bed2021-05-22 13:58 695  
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.mismatches_2D.txt2021-05-22 14:07 5.5K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.split.suspicious_2D.txt2021-05-22 14:07 6.0K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished.suspect_2D.txt2021-05-22 12:14 7.6K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished_asm.scaffold_track.txt2021-05-22 12:45 511K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.polished_asm.superscaf_track.txt2021-05-22 12:45 290K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom.asm2021-05-22 15:37 15K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom.assembly2021-05-22 15:53 126K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom.cprops2021-05-22 15:37 108K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom.fasta2021-05-22 17:04 1.2G 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom.hic2021-05-22 17:03 936M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom_asm.scaffold_track.txt2021-05-22 15:53 445K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.rawchrom_asm.superscaf_track.txt2021-05-22 15:53 253K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved.asm2021-05-22 10:50 17K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved.cprops2021-05-22 08:50 130K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved.hic2021-05-22 12:03 936M 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved.polish.assembly2021-05-22 12:45 151K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved_asm.scaffold_track.txt2021-05-22 10:53 510K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.resolved_asm.superscaf_track.txt2021-05-22 10:53 288K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split.asm2021-05-22 14:26 17K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split.assembly2021-05-22 15:37 151K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split.cprops2021-05-22 14:07 130K 
[ ]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split.hic2021-05-22 15:37 937M 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split_asm.scaffold_track.txt2021-05-22 14:29 511K 
[TXT]GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.split_asm.superscaf_track.txt2021-05-22 14:29 293K 
[ ]LICENSE2021-05-21 08:28 1.0K 
[TXT]README.md2021-05-21 08:28 8.7K 
[TXT]archive.GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.edits.at.step.1.txt2021-05-21 22:21 118K 
[TXT]archive.GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.edits.at.step.2.txt2021-05-22 02:04 136K 
[TXT]archive.GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.edits.at.step.3.txt2021-05-22 05:41 147K 
[TXT]archive.GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.edits.at.step.4.txt2021-05-22 08:50 156K 
[ ]coverage_wide.at.step.0.wig2021-05-21 18:03 763K 
[ ]coverage_wide.at.step.1.wig2021-05-21 22:21 764K 
[ ]coverage_wide.at.step.2.wig2021-05-22 02:04 762K 
[ ]coverage_wide.at.step.3.wig2021-05-22 05:41 763K 
[ ]coverage_wide.at.step.4.wig2021-05-22 08:50 763K 
[DIR]data/2021-05-21 08:28 -  
[ ]depletion_score_narrow.at.step.0.wig2021-05-21 18:03 16M 
[ ]depletion_score_narrow.at.step.1.wig2021-05-21 22:21 16M 
[ ]depletion_score_narrow.at.step.2.wig2021-05-22 02:04 16M 
[ ]depletion_score_narrow.at.step.3.wig2021-05-22 05:41 16M 
[ ]depletion_score_narrow.at.step.4.wig2021-05-22 08:50 16M 
[ ]depletion_score_wide.at.step.0.wig2021-05-21 17:57 788K 
[ ]depletion_score_wide.at.step.1.wig2021-05-21 22:14 799K 
[ ]depletion_score_wide.at.step.2.wig2021-05-22 01:59 803K 
[ ]depletion_score_wide.at.step.3.wig2021-05-22 05:34 805K 
[ ]depletion_score_wide.at.step.4.wig2021-05-22 08:45 805K 
[DIR]edit/2021-05-21 08:28 -  
[TXT]edits.for.step.1.txt2021-05-21 18:03 148K 
[TXT]edits.for.step.2.txt2021-05-21 22:21 29K 
[TXT]edits.for.step.3.txt2021-05-22 02:04 15K 
[TXT]edits.for.step.4.txt2021-05-22 05:41 11K 
[TXT]edits.for.step.5.txt2021-05-22 08:50 7.8K 
[DIR]finalize/2021-05-21 08:28 -  
[TXT]h.edits.txt2021-05-22 14:07 425  
[DIR]lift/2021-05-21 08:28 -  
[DIR]merge/2021-05-21 08:28 -  
[ ]mismatch_narrow.at.step.0.bed2021-05-21 18:03 13K 
[ ]mismatch_narrow.at.step.1.bed2021-05-21 22:21 5.5K 
[ ]mismatch_narrow.at.step.2.bed2021-05-22 02:04 5.4K 
[ ]mismatch_narrow.at.step.3.bed2021-05-22 05:41 5.7K 
[ ]mismatch_narrow.at.step.4.bed2021-05-22 08:50 5.9K 
[ ]mismatch_wide.at.step.0.bed2021-05-21 17:57 8.9K 
[ ]mismatch_wide.at.step.1.bed2021-05-21 22:14 3.9K 
[ ]mismatch_wide.at.step.2.bed2021-05-22 01:59 3.3K 
[ ]mismatch_wide.at.step.3.bed2021-05-22 05:34 3.5K 
[ ]mismatch_wide.at.step.4.bed2021-05-22 08:45 3.5K 
[TXT]mismatches.at.step.0.txt2021-05-21 18:03 24K 
[TXT]mismatches.at.step.1.txt2021-05-21 22:21 25K 
[TXT]mismatches.at.step.2.txt2021-05-22 02:04 25K 
[TXT]mismatches.at.step.3.txt2021-05-22 05:41 27K 
[TXT]mismatches.at.step.4.txt2021-05-22 08:50 27K 
[DIR]polish/2021-05-21 08:28 -  
[ ]repeats_wide.at.step.0.bed2021-05-21 18:03 0  
[ ]repeats_wide.at.step.1.bed2021-05-21 22:21 0  
[ ]repeats_wide.at.step.2.bed2021-05-22 02:04 0  
[ ]repeats_wide.at.step.3.bed2021-05-22 05:41 0  
[ ]repeats_wide.at.step.4.bed2021-05-22 08:50 0  
[TXT]run-asm-pipeline-post-review.sh2021-05-21 08:28 11K 
[TXT]run-asm-pipeline.sh2021-05-21 08:28 44K 
[DIR]scaffold/2021-05-21 08:28 -  
[DIR]seal/2021-05-21 08:28 -  
[DIR]split/2021-05-21 08:28 -  
[DIR]split_chrom_aware/2021-05-21 08:28 -  
[DIR]supp/2021-05-21 08:28 -  
[ ]suspect.at.step.0.bed2021-05-21 18:03 13K 
[ ]suspect.at.step.1.bed2021-05-21 22:21 5.5K 
[ ]suspect.at.step.2.bed2021-05-22 02:04 5.4K 
[ ]suspect.at.step.3.bed2021-05-22 05:41 5.7K 
[ ]suspect.at.step.4.bed2021-05-22 08:50 5.9K 
[TXT]suspect_2D.at.step.0.txt2021-05-21 18:03 172K 
[TXT]suspect_2D.at.step.1.txt2021-05-21 22:21 55K 
[TXT]suspect_2D.at.step.2.txt2021-05-22 02:04 40K 
[TXT]suspect_2D.at.step.3.txt2021-05-22 05:41 38K 
[TXT]suspect_2D.at.step.4.txt2021-05-22 08:50 35K 
[DIR]utils/2021-05-21 08:28 -  
[DIR]visualize/2022-02-08 17:14 -  
[ ]z2021-05-21 08:28 508  
[ ]zKF3D-5.1.err2021-05-22 17:33 27K 
[ ]zKF3D-5.1.out2021-05-22 18:53 57K 
[ ]zKF3D-5.1.sbatch2021-05-21 08:29 707  
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