export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-13-NextSeq-run/juicer-L1518-Naegleria_gruberi-Hi-C-MboI_MseI -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-13-NextSeq-run/juicer-L1518-Naegleria_gruberi-Hi-C-MboI_MseI -p /oak/stanford/groups/akundaje/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/GCA_000004985.1_V1.0_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/bwa-indexes/GCA_000004985.1_V1.0_genomic.fa