Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-13-NextSeq-run/juicer-L1518-Naegleria_gruberi-Hi-C-MboI_MseI -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2020-06-13-NextSeq-run/juicer-L1518-Naegleria_gruberi-Hi-C-MboI_MseI -p /oak/stanford/groups/akundaje/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/GCA_000004985.1_V1.0_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/bwa-indexes/GCA_000004985.1_V1.0_genomic.fa                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  140,719,501
 Normal Paired: 62,793,257 (44.62%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 77,926,244 (55.38%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 62,793,257 (44.62%)
Unique Reads: 42,712,241 (30.35%)
PCR Duplicates: 20,042,000 (14.24%)
Optical Duplicates: 39,016 (0.03%)
Library Complexity Estimate: 75,971,768
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,909,494 (3.49% / 11.49%)
Hi-C Contacts: 37,802,747 (26.86% / 88.51%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 770,128  (0.55% / 1.80%)
Intra-chromosomal: 37,032,619  (26.32% / 86.70%)
Short Range (<20Kb): 36,788,223  (26.14% / 86.13%)
Long Range (>20Kb): 237,388  (0.17% / 0.56%)