Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-20-NextSeq-run/juicer-L1468-Aiptasia_Symbiodinium_Hi-C-Aiptasia -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-20-NextSeq-run/juicer-L1468-Aiptasia_Symbiodinium_Hi-C-Aiptasia -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                        
Sequenced Read Pairs:  16,733,545
 Normal Paired: 11,541,066 (68.97%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 5,192,479 (31.03%)
 Ligation Motif Present: 8,642 (0.05%)
Alignable (Normal+Chimeric Paired): 11,541,066 (68.97%)
Unique Reads: 8,724,069 (52.14%)
PCR Duplicates: 2,814,785 (16.82%)
Optical Duplicates: 2,212 (0.01%)
Library Complexity Estimate: 19,623,981
Intra-fragment Reads: 4,746,763 (28.37% / 54.41%)
Below MAPQ Threshold: 2,758,973 (16.49% / 31.62%)
Hi-C Contacts: 1,218,333 (7.28% / 13.97%)
 Ligation Motif Present: 3,340  (0.02% / 0.04%)
 3' Bias (Long Range): 47% - 53%
 Pair Type %(L-I-O-R): 12% - 39% - 36% - 12%
Inter-chromosomal: 114,253  (0.68% / 1.31%)
Intra-chromosomal: 1,104,080  (6.60% / 12.66%)
Short Range (<20Kb): 1,100,437  (6.58% / 12.61%)
Long Range (>20Kb): 3,633  (0.02% / 0.04%)