Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L143 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L143 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  17,358,358
 Normal Paired: 49,530 (0.29%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 17,308,827 (99.71%)
 Unmapped: 0 (0.00%)
 Ligation Motif Present: 4,414,002 (25.43%)
Alignable (Normal+Chimeric Paired): 49,530 (0.29%)
Unique Reads: 48,098 (0.28%)
PCR Duplicates: 1,413 (0.01%)
Optical Duplicates: 19 (0.00%)
Library Complexity Estimate: 850,840
Intra-fragment Reads: 179 (0.00% / 0.37%)
Below MAPQ Threshold: 20,746 (0.12% / 43.13%)
Hi-C Contacts: 27,173 (0.16% / 56.50%)
 Ligation Motif Present: 25,964  (0.15% / 53.98%)
 3' Bias (Long Range): 92% - 8%
 Pair Type %(L-I-O-R): 28% - 28% - 20% - 24%
Inter-chromosomal: 24,159  (0.14% / 50.23%)
Intra-chromosomal: 3,014  (0.02% / 6.27%)
Short Range (<20Kb): 2,756  (0.02% / 5.73%)
Long Range (>20Kb): 258  (0.00% / 0.54%)