Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L143 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2018-03-25-NextSeq-run/juicer-L143 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  17,358,358
 Normal Paired: 49,530 (0.29%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 17,308,827 (99.71%)
 Unmapped: 0 (0.00%)
 Ligation Motif Present: 4,414,002 (25.43%)
Alignable (Normal+Chimeric Paired): 49,530 (0.29%)
Unique Reads: 48,098 (0.28%)
PCR Duplicates: 1,413 (0.01%)
Optical Duplicates: 19 (0.00%)
Library Complexity Estimate: 850,840
Intra-fragment Reads: 179 (0.00% / 0.37%)
Below MAPQ Threshold: 15,509 (0.09% / 32.24%)
Hi-C Contacts: 32,410 (0.19% / 67.38%)
 Ligation Motif Present: 30,702  (0.18% / 63.83%)
 3' Bias (Long Range): 92% - 8%
 Pair Type %(L-I-O-R): 29% - 29% - 19% - 23%
Inter-chromosomal: 29,103  (0.17% / 60.51%)
Intra-chromosomal: 3,307  (0.02% / 6.88%)
Short Range (<20Kb): 3,023  (0.02% / 6.29%)
Long Range (>20Kb): 284  (0.00% / 0.59%)