Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1355-Phaeodactylum_tricoturnum-HiC-MboI_MluCI -d /srv/scratch/marinovg/juicer-L1355-Phaeodactylum_tricoturnum-HiC-MboI_MluCI -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Phaeodactylum_tricornutum-ASM15095v2/bwa-indexes/Phaeodactylum_tricornutum.ASM15095v2.20+chrM.fa                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  107,273,263
 Normal Paired: 78,875,516 (73.53%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 28,397,747 (26.47%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 78,875,516 (73.53%)
Unique Reads: 20,088,541 (18.73%)
PCR Duplicates: 58,775,231 (54.79%)
Optical Duplicates: 11,744 (0.01%)
Library Complexity Estimate: 20,529,097
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,316,436 (4.02% / 21.49%)
Hi-C Contacts: 15,772,105 (14.70% / 78.51%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,629,930  (5.25% / 28.03%)
Intra-chromosomal: 10,142,175  (9.45% / 50.49%)
Short Range (<20Kb): 8,075,977  (7.53% / 40.20%)
Long Range (>20Kb): 2,048,721  (1.91% / 10.20%)