export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1328-Emiliania_huxley_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1328-Emiliania_huxley_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC.fa