Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1328-Emiliania_huxley_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-12-13-NextSeq-run/juicer-L1328-Emiliania_huxley_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.20+chrM+chrC.fa                                                                                                       
Sequenced Read Pairs:  127,012,029
 Normal Paired: 95,197,060 (74.95%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 31,814,969 (25.05%)
 Ligation Motif Present: 475,846 (0.37%)
Alignable (Normal+Chimeric Paired): 95,197,060 (74.95%)
Unique Reads: 54,573,637 (42.97%)
PCR Duplicates: 40,608,525 (31.97%)
Optical Duplicates: 14,898 (0.01%)
Library Complexity Estimate: 76,836,341
Intra-fragment Reads: 4,651,390 (3.66% / 8.52%)
Below MAPQ Threshold: 40,442,149 (31.84% / 74.11%)
Hi-C Contacts: 9,480,098 (7.46% / 17.37%)
 Ligation Motif Present: 28,883  (0.02% / 0.05%)
 3' Bias (Long Range): 51% - 49%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,410,177  (1.90% / 4.42%)
Intra-chromosomal: 7,069,921  (5.57% / 12.95%)
Short Range (<20Kb): 6,665,629  (5.25% / 12.21%)
Long Range (>20Kb): 403,897  (0.32% / 0.74%)