Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-01-10-NextSeq-run/juicer-L1322-Chlamydomonas_reinhardtii_CC125-Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-01-10-NextSeq-run/juicer-L1322-Chlamydomonas_reinhardtii_CC125-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt.20+chrM+chrC.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt/bwa-indexes/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt.20+chrM+chrC_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt/bwa-indexes/Chlamydomonas_reinhardtii-v5.5_CC_503_cw92_mt.20+chrM+chrC.fa                                                                    
Sequenced Read Pairs:  6,301,893
 Normal Paired: 277,202 (4.40%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 6,024,691 (95.60%)
 Ligation Motif Present: 5,297 (0.08%)
Alignable (Normal+Chimeric Paired): 277,202 (4.40%)
Unique Reads: 206,070 (3.27%)
PCR Duplicates: 71,094 (1.13%)
Optical Duplicates: 38 (0.00%)
Library Complexity Estimate: 443,277
Intra-fragment Reads: 112,589 (1.79% / 54.64%)
Below MAPQ Threshold: 59,478 (0.94% / 28.86%)
Hi-C Contacts: 34,003 (0.54% / 16.50%)
 Ligation Motif Present: 70  (0.00% / 0.03%)
 3' Bias (Long Range): 52% - 48%
 Pair Type %(L-I-O-R): 26% - 24% - 25% - 24%
Inter-chromosomal: 2,545  (0.04% / 1.24%)
Intra-chromosomal: 31,458  (0.50% / 15.27%)
Short Range (<20Kb): 28,763  (0.46% / 13.96%)
Long Range (>20Kb): 2,695  (0.04% / 1.31%)