export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-12-14-NextSeq-run-2/juicer-L1275-Guillardia_theta-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-12-14-NextSeq-run-2/juicer-L1275-Guillardia_theta-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/Guillardia_theta.GCA_000315625.1.20+chrM.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/bwa-indexes/Guillardia_theta.GCA_000315625.1.20+chrM_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/bwa-indexes/Guillardia_theta.GCA_000315625.1.20+chrM.fa