Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-12-14-NextSeq-run-2/juicer-L1275-Guillardia_theta-Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-12-14-NextSeq-run-2/juicer-L1275-Guillardia_theta-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/Guillardia_theta.GCA_000315625.1.20+chrM.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/bwa-indexes/Guillardia_theta.GCA_000315625.1.20+chrM_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Cryptophyte/Guillardia_theta/bwa-indexes/Guillardia_theta.GCA_000315625.1.20+chrM.fa                                                                                                                                                                                                                                             
Sequenced Read Pairs:  66,675,785
 Normal Paired: 49,820,288 (74.72%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 16,855,497 (25.28%)
 Ligation Motif Present: 12,439,957 (18.66%)
Alignable (Normal+Chimeric Paired): 49,820,288 (74.72%)
Unique Reads: 38,630,069 (57.94%)
PCR Duplicates: 11,169,896 (16.75%)
Optical Duplicates: 20,323 (0.03%)
Library Complexity Estimate: 93,706,204
Intra-fragment Reads: 258,631 (0.39% / 0.67%)
Below MAPQ Threshold: 10,712,811 (16.07% / 27.73%)
Hi-C Contacts: 27,658,627 (41.48% / 71.60%)
 Ligation Motif Present: 1,296,505  (1.94% / 3.36%)
 3' Bias (Long Range): 69% - 31%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,162,644  (15.24% / 26.31%)
Intra-chromosomal: 17,495,983  (26.24% / 45.29%)
Short Range (<20Kb): 11,794,010  (17.69% / 30.53%)
Long Range (>20Kb): 5,701,750  (8.55% / 14.76%)