Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1246-SSB01-a_amanitin-48h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1246-SSB01-a_amanitin-48h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  78,435,874
 Normal Paired: 51,551,798 (65.72%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 26,884,076 (34.28%)
 Ligation Motif Present: 2,154,866 (2.75%)
Alignable (Normal+Chimeric Paired): 51,551,798 (65.72%)
Unique Reads: 43,725,739 (55.75%)
PCR Duplicates: 7,808,791 (9.96%)
Optical Duplicates: 17,268 (0.02%)
Library Complexity Estimate: 152,401,382
Intra-fragment Reads: 10,141,662 (12.93% / 23.19%)
Below MAPQ Threshold: 11,569,105 (14.75% / 26.46%)
Hi-C Contacts: 22,014,972 (28.07% / 50.35%)
 Ligation Motif Present: 208,740  (0.27% / 0.48%)
 3' Bias (Long Range): 62% - 38%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,163,232  (12.96% / 23.24%)
Intra-chromosomal: 11,851,740  (15.11% / 27.10%)
Short Range (<20Kb): 9,628,733  (12.28% / 22.02%)
Long Range (>20Kb): 2,222,926  (2.83% / 5.08%)