Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1243-SSB01-a_amanitin-24h-Hi-C-rep1-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                
Sequenced Read Pairs:  81,532,584
 Normal Paired: 51,973,309 (63.75%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 29,559,275 (36.25%)
 Ligation Motif Present: 6,340,728 (7.78%)
Alignable (Normal+Chimeric Paired): 51,973,309 (63.75%)
Unique Reads: 46,622,828 (57.18%)
PCR Duplicates: 5,321,339 (6.53%)
Optical Duplicates: 29,142 (0.04%)
Library Complexity Estimate: 235,898,386
Intra-fragment Reads: 3,326,620 (4.08% / 7.14%)
Below MAPQ Threshold: 13,547,769 (16.62% / 29.06%)
Hi-C Contacts: 29,748,439 (36.49% / 63.81%)
 Ligation Motif Present: 546,077  (0.67% / 1.17%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 17,594,153  (21.58% / 37.74%)
Intra-chromosomal: 12,154,286  (14.91% / 26.07%)
Short Range (<20Kb): 5,518,236  (6.77% / 11.84%)
Long Range (>20Kb): 6,635,937  (8.14% / 14.23%)