Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1242-SSB01-a_amanitin-16h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1242-SSB01-a_amanitin-16h-Hi-C-rep2-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                      
Sequenced Read Pairs:  58,010,759
 Normal Paired: 36,144,433 (62.31%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 21,866,326 (37.69%)
 Ligation Motif Present: 5,001,229 (8.62%)
Alignable (Normal+Chimeric Paired): 36,144,433 (62.31%)
Unique Reads: 33,364,554 (57.51%)
PCR Duplicates: 2,761,601 (4.76%)
Optical Duplicates: 18,278 (0.03%)
Library Complexity Estimate: 224,091,857
Intra-fragment Reads: 1,126,001 (1.94% / 3.37%)
Below MAPQ Threshold: 10,001,660 (17.24% / 29.98%)
Hi-C Contacts: 22,236,893 (38.33% / 66.65%)
 Ligation Motif Present: 440,666  (0.76% / 1.32%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,606,617  (25.18% / 43.78%)
Intra-chromosomal: 7,630,276  (13.15% / 22.87%)
Short Range (<20Kb): 2,377,532  (4.10% / 7.13%)
Long Range (>20Kb): 5,252,687  (9.05% / 15.74%)