Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -d /srv/scratch/marinovg/juicer-L1240-SSB01-a_amanitin-0h-Hi-C-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb-22M-contacts -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                  
Sequenced Read Pairs:  71,227,079
 Normal Paired: 46,279,014 (64.97%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 24,948,065 (35.03%)
 Ligation Motif Present: 4,169,013 (5.85%)
Alignable (Normal+Chimeric Paired): 46,279,014 (64.97%)
Unique Reads: 41,278,396 (57.95%)
PCR Duplicates: 4,989,537 (7.01%)
Optical Duplicates: 11,081 (0.02%)
Library Complexity Estimate: 198,804,039
Intra-fragment Reads: 7,387,126 (10.37% / 17.90%)
Below MAPQ Threshold: 11,195,641 (15.72% / 27.12%)
Hi-C Contacts: 22,695,629 (31.86% / 54.98%)
 Ligation Motif Present: 381,162  (0.54% / 0.92%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,582,962  (16.26% / 28.06%)
Intra-chromosomal: 11,112,667  (15.60% / 26.92%)
Short Range (<20Kb): 7,448,723  (10.46% / 18.05%)
Long Range (>20Kb): 3,663,869  (5.14% / 8.88%)