#!/bin/bash
#SBATCH --job-name=zL1197-1
#SBATCH --output=zL1197.1.out
#SBATCH --error=zL1197.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1197-Dunaliella_salina_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-11-16-NextSeq-run/juicer-L1197-Dunaliella_salina_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Dunaliella_salina-Dsal_v1.0/GCA_002284615.1_Dsal_v1.0_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Dunaliella_salina-Dsal_v1.0/bwa-indexes/GCA_002284615.1_Dsal_v1.0_genomic_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Dunaliella_salina-Dsal_v1.0/bwa-indexes/GCA_002284615.1_Dsal_v1.0_genomic.fa