export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-31-NextSeq-run/juicer-L1148-Ectocarpus_siliculosus_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-31-NextSeq-run/juicer-L1148-Ectocarpus_siliculosus_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/bwa-indexes/GCA_000310025.1_ASM31002v1_genomic_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/bwa-indexes/GCA_000310025.1_ASM31002v1_genomic.fa