Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1112-Galdieria_sulphuraria_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1368-Galdieria_sulphuraria_gDNA/SPAdes-3.14-L1368-Galdieria_sulphuraria_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1368-Galdieria_sulphuraria_gDNA/SPAdes-3.14-L1368-Galdieria_sulphuraria_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  41,153,632
 Normal Paired: 2,911,523 (7.07%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 38,242,109 (92.93%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 2,911,523 (7.07%)
Unique Reads: 2,549,773 (6.20%)
PCR Duplicates: 360,558 (0.88%)
Optical Duplicates: 1,192 (0.00%)
Library Complexity Estimate: 10,754,134
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 792,658 (1.93% / 31.09%)
Hi-C Contacts: 1,757,115 (4.27% / 68.91%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 854,258  (2.08% / 33.50%)
Intra-chromosomal: 902,857  (2.19% / 35.41%)
Short Range (<20Kb): 868,600  (2.11% / 34.07%)
Long Range (>20Kb): 33,435  (0.08% / 1.31%)