Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-06-NextSeq-run/juicer-L1110-Nannochloropsis_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-06-NextSeq-run/juicer-L1110-Nannochloropsis_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Eustygmatophyta/Nannochloropsis_oculata_CCMP525-ASM433545v1/GCA_004335455.1_ASM433545v1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Eustygmatophyta/Nannochloropsis_oculata_CCMP525-ASM433545v1/bwa-indexes/Nannochloropsis_oculata_CCMP525-ASM433545v1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Eustygmatophyta/Nannochloropsis_oculata_CCMP525-ASM433545v1/bwa-indexes/GCA_004335455.1_ASM433545v1_genomic.fa                                                                                                                                                             
Sequenced Read Pairs:  297,934,474
 Normal Paired: 146,778,252 (49.27%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 151,156,222 (50.73%)
 Ligation Motif Present: 364,687 (0.12%)
Alignable (Normal+Chimeric Paired): 146,778,252 (49.27%)
Unique Reads: 95,046,506 (31.90%)
PCR Duplicates: 51,700,045 (17.35%)
Optical Duplicates: 31,701 (0.01%)
Library Complexity Estimate: 155,764,479
Intra-fragment Reads: 31,621,486 (10.61% / 33.27%)
Below MAPQ Threshold: 2,503,330 (0.84% / 2.63%)
Hi-C Contacts: 60,921,690 (20.45% / 64.10%)
 Ligation Motif Present: 69,577  (0.02% / 0.07%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 24% - 25% - 25%
Inter-chromosomal: 40,716,573  (13.67% / 42.84%)
Intra-chromosomal: 20,205,117  (6.78% / 21.26%)
Short Range (<20Kb): 20,024,736  (6.72% / 21.07%)
Long Range (>20Kb): 179,352  (0.06% / 0.19%)