Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 40 threads; java version "1.8.0_131"; scripts/juicer.sh -t 40 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1107-Aiptasia_Sym_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-10-03-NextSeq-run/juicer-L1107-Aiptasia_Sym_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/GCA_001417965.1_Aiptasia_genome_1.1_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/Aiptasia_pallida-1.1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/bwa-indexes/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa                                                                                                                                                                                                                                            
Sequenced Read Pairs:  36,190,643
 Normal Paired: 7,318,017 (20.22%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 28,872,626 (79.78%)
 Ligation Motif Present: 53,739 (0.15%)
Alignable (Normal+Chimeric Paired): 7,318,017 (20.22%)
Unique Reads: 5,027,557 (13.89%)
PCR Duplicates: 2,289,891 (6.33%)
Optical Duplicates: 569 (0.00%)
Library Complexity Estimate: 9,098,228
Intra-fragment Reads: 2,520,235 (6.96% / 50.13%)
Below MAPQ Threshold: 1,830,583 (5.06% / 36.41%)
Hi-C Contacts: 676,739 (1.87% / 13.46%)
 Ligation Motif Present: 1,864  (0.01% / 0.04%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 14% - 37% - 37% - 13%
Inter-chromosomal: 58,477  (0.16% / 1.16%)
Intra-chromosomal: 618,262  (1.71% / 12.30%)
Short Range (<20Kb): 616,206  (1.70% / 12.26%)
Long Range (>20Kb): 2,048  (0.01% / 0.04%)