Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-09-16-NextSeq-run/juicer-L1028-Emiliania_huxley_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2019/2019-09-16-NextSeq-run/juicer-L1028-Emiliania_huxley_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/GCA_000372725.1_Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/bwa-indexes/GCA_000372725.1_Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_genomic.fa                                                                                                  
Sequenced Read Pairs:  84,352,338
 Normal Paired: 97,623 (0.12%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 84,254,715 (99.88%)
 Ligation Motif Present: 233,881 (0.28%)
Alignable (Normal+Chimeric Paired): 97,623 (0.12%)
Unique Reads: 88,184 (0.10%)
PCR Duplicates: 9,414 (0.01%)
Optical Duplicates: 25 (0.00%)
Library Complexity Estimate: 472,830
Intra-fragment Reads: 17,327 (0.02% / 19.65%)
Below MAPQ Threshold: 62,272 (0.07% / 70.62%)
Hi-C Contacts: 8,585 (0.01% / 9.74%)
 Ligation Motif Present: 18  (0.00% / 0.02%)
 3' Bias (Long Range): 30% - 70%
 Pair Type %(L-I-O-R): 21% - 33% - 12% - 33%
Inter-chromosomal: 1,132  (0.00% / 1.28%)
Intra-chromosomal: 7,453  (0.01% / 8.45%)
Short Range (<20Kb): 7,428  (0.01% / 8.42%)
Long Range (>20Kb): 24  (0.00% / 0.03%)