## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L1909-GM18278_FS_test_50K.2x25mers.hg38-female.unique.nochrM.bam] OUTPUT=L1909-GM18278_FS_test_50K.2x25mers.hg38-female.unique.nochrM.dedup.bam METRICS_FILE=L1909-GM18278_FS_test_50K.2x25mers.hg38-female.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Nov 06 12:33:44 PST 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3501387	0	0	220714	32793	0.063036	30844224

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.008928
2.0	1.909585
3.0	2.713591
4.0	3.431318
5.0	4.072023
6.0	4.643973
7.0	5.154546
8.0	5.610328
9.0	6.017199
10.0	6.380408
11.0	6.70464
12.0	6.994078
13.0	7.252456
14.0	7.483107
15.0	7.689006
16.0	7.872809
17.0	8.036888
18.0	8.18336
19.0	8.314113
20.0	8.430835
21.0	8.535031
22.0	8.628046
23.0	8.711079
24.0	8.785201
25.0	8.85137
26.0	8.910437
27.0	8.963166
28.0	9.010237
29.0	9.052256
30.0	9.089766
31.0	9.123251
32.0	9.153143
33.0	9.179826
34.0	9.203647
35.0	9.224911
36.0	9.243893
37.0	9.260838
38.0	9.275965
39.0	9.289468
40.0	9.301522
41.0	9.312283
42.0	9.321889
43.0	9.330464
44.0	9.338119
45.0	9.344953
46.0	9.351053
47.0	9.356498
48.0	9.36136
49.0	9.365699
50.0	9.369573
51.0	9.373031
52.0	9.376118
53.0	9.378874
54.0	9.381334
55.0	9.38353
56.0	9.38549
57.0	9.38724
58.0	9.388802
59.0	9.390197
60.0	9.391442
61.0	9.392553
62.0	9.393545
63.0	9.394431
64.0	9.395221
65.0	9.395927
66.0	9.396557
67.0	9.397119
68.0	9.397622
69.0	9.39807
70.0	9.39847
71.0	9.398827
72.0	9.399146
73.0	9.39943
74.0	9.399684
75.0	9.399911
76.0	9.400114
77.0	9.400294
78.0	9.400456
79.0	9.4006
80.0	9.400728
81.0	9.400843
82.0	9.400945
83.0	9.401037
84.0	9.401119
85.0	9.401191
86.0	9.401257
87.0	9.401315
88.0	9.401366
89.0	9.401413
90.0	9.401454
91.0	9.401491
92.0	9.401524
93.0	9.401553
94.0	9.401579
95.0	9.401603
96.0	9.401624
97.0	9.401642
98.0	9.401659
99.0	9.401674
100.0	9.401687