Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB901KXQ -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB901KXQ -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  208,185,348
 Normal Paired: 124,346,678 (59.73%)
 Chimeric Paired: 53,075,954 (25.49%)
 Chimeric Ambiguous: 23,732,869 (11.40%)
 Unmapped: 7,029,847 (3.38%)
 Ligation Motif Present: 148,392,695 (71.28%)
Alignable (Normal+Chimeric Paired): 177,422,632 (85.22%)
Unique Reads: 172,360,499 (82.79%)
PCR Duplicates: 5,053,864 (2.43%)
Optical Duplicates: 8,269 (0.00%)
Library Complexity Estimate: 3,054,615,464
Intra-fragment Reads: 1,581,390 (0.76% / 0.92%)
Below MAPQ Threshold: 51,644,029 (24.81% / 29.96%)
Hi-C Contacts: 119,135,080 (57.23% / 69.12%)
 Ligation Motif Present: 70,494,636  (33.86% / 40.90%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 22,570,230  (10.84% / 13.09%)
Intra-chromosomal: 96,564,850  (46.38% / 56.02%)
Short Range (<20Kb): 37,996,880  (18.25% / 22.05%)
Long Range (>20Kb): 58,567,645  (28.13% / 33.98%)