Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB884ZEV -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB884ZEV -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  250,403,540
 Normal Paired: 146,052,092 (58.33%)
 Chimeric Paired: 67,021,558 (26.77%)
 Chimeric Ambiguous: 28,846,699 (11.52%)
 Unmapped: 8,483,191 (3.39%)
 Ligation Motif Present: 185,601,148 (74.12%)
Alignable (Normal+Chimeric Paired): 213,073,650 (85.09%)
Unique Reads: 205,788,407 (82.18%)
PCR Duplicates: 7,270,730 (2.90%)
Optical Duplicates: 14,513 (0.01%)
Library Complexity Estimate: 3,050,277,099
Intra-fragment Reads: 1,885,222 (0.75% / 0.92%)
Below MAPQ Threshold: 42,067,840 (16.80% / 20.44%)
Hi-C Contacts: 161,835,345 (64.63% / 78.64%)
 Ligation Motif Present: 98,202,882  (39.22% / 47.72%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 33,840,183  (13.51% / 16.44%)
Intra-chromosomal: 127,995,162  (51.12% / 62.20%)
Short Range (<20Kb): 49,374,410  (19.72% / 23.99%)
Long Range (>20Kb): 78,620,470  (31.40% / 38.20%)