Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB336JUN -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-Patski-mm10/juicer-Patski-ENCLB336JUN -p /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bwa-indexes/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  80,444,568
 Normal Paired: 57,443,010 (71.41%)
 Chimeric Paired: 15,815,893 (19.66%)
 Chimeric Ambiguous: 5,015,985 (6.24%)
 Unmapped: 2,169,680 (2.70%)
 Ligation Motif Present: 43,239,969 (53.75%)
Alignable (Normal+Chimeric Paired): 73,258,903 (91.07%)
Unique Reads: 70,122,685 (87.17%)
PCR Duplicates: 3,123,366 (3.88%)
Optical Duplicates: 12,852 (0.02%)
Library Complexity Estimate: 834,253,578
Intra-fragment Reads: 884,748 (1.10% / 1.26%)
Below MAPQ Threshold: 15,045,367 (18.70% / 21.46%)
Hi-C Contacts: 54,192,570 (67.37% / 77.28%)
 Ligation Motif Present: 23,202,215  (28.84% / 33.09%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,774,008  (14.64% / 16.79%)
Intra-chromosomal: 42,418,562  (52.73% / 60.49%)
Short Range (<20Kb): 14,530,507  (18.06% / 20.72%)
Long Range (>20Kb): 27,888,019  (34.67% / 39.77%)