Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB995LGB -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB995LGB -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  240,438,944
 Normal Paired: 181,465,265 (75.47%)
 Chimeric Paired: 42,379,012 (17.63%)
 Chimeric Ambiguous: 9,045,684 (3.76%)
 Unmapped: 7,548,983 (3.14%)
 Ligation Motif Present: 102,081,093 (42.46%)
Alignable (Normal+Chimeric Paired): 223,844,277 (93.10%)
Unique Reads: 219,926,923 (91.47%)
PCR Duplicates: 3,828,205 (1.59%)
Optical Duplicates: 89,149 (0.04%)
Library Complexity Estimate: 6,464,342,983
Intra-fragment Reads: 1,306,896 (0.54% / 0.59%)
Below MAPQ Threshold: 50,279,182 (20.91% / 22.86%)
Hi-C Contacts: 168,340,845 (70.01% / 76.54%)
 Ligation Motif Present: 54,285,342  (22.58% / 24.68%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 26,349,034  (10.96% / 11.98%)
Intra-chromosomal: 141,991,811  (59.06% / 64.56%)
Short Range (<20Kb): 41,345,054  (17.20% / 18.80%)
Long Range (>20Kb): 100,646,649  (41.86% / 45.76%)