Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB880XHP -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB880XHP -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  117,797,690
 Normal Paired: 89,589,606 (76.05%)
 Chimeric Paired: 21,995,854 (18.67%)
 Chimeric Ambiguous: 4,351,576 (3.69%)
 Unmapped: 1,860,654 (1.58%)
 Ligation Motif Present: 52,287,159 (44.39%)
Alignable (Normal+Chimeric Paired): 111,585,460 (94.73%)
Unique Reads: 110,104,262 (93.47%)
PCR Duplicates: 1,452,570 (1.23%)
Optical Duplicates: 28,628 (0.02%)
Library Complexity Estimate: 4,246,494,584
Intra-fragment Reads: 1,849,695 (1.57% / 1.68%)
Below MAPQ Threshold: 13,405,317 (11.38% / 12.18%)
Hi-C Contacts: 94,849,250 (80.52% / 86.14%)
 Ligation Motif Present: 32,141,461  (27.29% / 29.19%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 16,151,872  (13.71% / 14.67%)
Intra-chromosomal: 78,697,378  (66.81% / 71.48%)
Short Range (<20Kb): 24,172,363  (20.52% / 21.95%)
Long Range (>20Kb): 54,524,932  (46.29% / 49.52%)