Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB512HIP -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB512HIP -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  276,809,208
 Normal Paired: 201,218,286 (72.69%)
 Chimeric Paired: 43,016,559 (15.54%)
 Chimeric Ambiguous: 13,306,774 (4.81%)
 Unmapped: 19,267,589 (6.96%)
 Ligation Motif Present: 116,563,097 (42.11%)
Alignable (Normal+Chimeric Paired): 244,234,845 (88.23%)
Unique Reads: 231,774,677 (83.73%)
PCR Duplicates: 12,200,721 (4.41%)
Optical Duplicates: 259,447 (0.09%)
Library Complexity Estimate: 2,357,342,168
Intra-fragment Reads: 1,860,377 (0.67% / 0.80%)
Below MAPQ Threshold: 60,660,914 (21.91% / 26.17%)
Hi-C Contacts: 169,253,386 (61.14% / 73.02%)
 Ligation Motif Present: 57,004,591  (20.59% / 24.59%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 24,916,528  (9.00% / 10.75%)
Intra-chromosomal: 144,336,858  (52.14% / 62.27%)
Short Range (<20Kb): 48,724,431  (17.60% / 21.02%)
Long Range (>20Kb): 95,612,346  (34.54% / 41.25%)