Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB201RHE -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB201RHE -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  170,128,100
 Normal Paired: 78,262,960 (46.00%)
 Chimeric Paired: 75,320,003 (44.27%)
 Chimeric Ambiguous: 13,982,281 (8.22%)
 Unmapped: 2,562,856 (1.51%)
 Ligation Motif Present: 123,451,203 (72.56%)
Alignable (Normal+Chimeric Paired): 153,582,963 (90.27%)
Unique Reads: 135,968,983 (79.92%)
PCR Duplicates: 17,394,129 (10.22%)
Optical Duplicates: 219,851 (0.13%)
Library Complexity Estimate: 623,946,551
Intra-fragment Reads: 298,967 (0.18% / 0.22%)
Below MAPQ Threshold: 13,854,723 (8.14% / 10.19%)
Hi-C Contacts: 121,815,293 (71.60% / 89.59%)
 Ligation Motif Present: 58,461,059  (34.36% / 43.00%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 17,867,880  (10.50% / 13.14%)
Intra-chromosomal: 103,947,413  (61.10% / 76.45%)
Short Range (<20Kb): 27,324,219  (16.06% / 20.10%)
Long Range (>20Kb): 76,623,143  (45.04% / 56.35%)