Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB068PBQ -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/DNAzoo/2021-07-13-IMR90-hg38/juicer-IMR90-ENCLB068PBQ -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  211,211,902
 Normal Paired: 92,922,121 (43.99%)
 Chimeric Paired: 96,100,603 (45.50%)
 Chimeric Ambiguous: 17,470,045 (8.27%)
 Unmapped: 4,719,133 (2.23%)
 Ligation Motif Present: 155,647,229 (73.69%)
Alignable (Normal+Chimeric Paired): 189,022,724 (89.49%)
Unique Reads: 165,269,764 (78.25%)
PCR Duplicates: 23,463,248 (11.11%)
Optical Duplicates: 289,712 (0.14%)
Library Complexity Estimate: 694,753,800
Intra-fragment Reads: 372,018 (0.18% / 0.23%)
Below MAPQ Threshold: 16,965,209 (8.03% / 10.27%)
Hi-C Contacts: 147,932,537 (70.04% / 89.51%)
 Ligation Motif Present: 72,157,496  (34.16% / 43.66%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 21,168,390  (10.02% / 12.81%)
Intra-chromosomal: 126,764,147  (60.02% / 76.70%)
Short Range (<20Kb): 36,349,574  (17.21% / 21.99%)
Long Range (>20Kb): 90,414,524  (42.81% / 54.71%)