segment_juncs v2.0.8 (3864)
---------------------------
[samopen] SAM header is present: 15 sequences.
Loading reference sequences...
	Loading chr2L...done
	Loading chr2LHet...done
	Loading chr2R...done
	Loading chr2RHet...done
	Loading chr3L...done
	Loading chr3LHet...done
	Loading chr3R...done
	Loading chr3RHet...done
	Loading chr4...done
	Loading chrM...done
	Loading chrUextra...done
	Loading chrU...done
	Loading chrX...done
	Loading chrXHet...done
	Loading chrYHet...done
	Loading ...done
>> Performing segment-search:
Loading left segment hits...
done.
	found 7430 potential split-segment junctions
	found 0 potential small deletions
	found 0 potential small insertions
>> Performing coverage-search:
 Map covers 14376415 bases
 Map covers 14074081 bases in sufficiently long segments
 Map contains 296582 good islands
 14551908 are left looking bases
 14550716 are right looking bases
Collecting potential splice sites in islands
reporting synthetic splice junctions...
Examining donor-acceptor pairings in chr2L
Examining donor-acceptor pairings in chr2LHet
Examining donor-acceptor pairings in chr2R
Examining donor-acceptor pairings in chr2RHet
Examining donor-acceptor pairings in chr3L
Examining donor-acceptor pairings in chr3LHet
Examining donor-acceptor pairings in chr3R
Examining donor-acceptor pairings in chr3RHet
Examining donor-acceptor pairings in chr4
Examining donor-acceptor pairings in chrM
Examining donor-acceptor pairings in chrU
Examining donor-acceptor pairings in chrUextra
Examining donor-acceptor pairings in chrX
Examining donor-acceptor pairings in chrXHet
Examining donor-acceptor pairings in chrYHet
	found 1041771 potential junctions
Reported 1048026 total potential splices
Reporting 0 potential deletions...
Reporting 0 potential insertions...
Reporting potential fusions...