## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[S2-ATAC-seq-rep1-GSM2756640.2x36mers.unique.bam] OUTPUT=S2-ATAC-seq-rep1-GSM2756640.2x36mers.unique.dedup.bam METRICS_FILE=S2-ATAC-seq-rep1-GSM2756640.2x36mers.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Sep 22 07:29:00 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	56474030	38307670	0	31742751	0	0.562077	28773158

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.140474
3.0	1.160207
4.0	1.162979
5.0	1.163368
6.0	1.163423
7.0	1.163431
8.0	1.163432
9.0	1.163432
10.0	1.163432
11.0	1.163432
12.0	1.163432
13.0	1.163432
14.0	1.163432
15.0	1.163432
16.0	1.163432
17.0	1.163432
18.0	1.163432
19.0	1.163432
20.0	1.163432
21.0	1.163432
22.0	1.163432
23.0	1.163432
24.0	1.163432
25.0	1.163432
26.0	1.163432
27.0	1.163432
28.0	1.163432
29.0	1.163432
30.0	1.163432
31.0	1.163432
32.0	1.163432
33.0	1.163432
34.0	1.163432
35.0	1.163432
36.0	1.163432
37.0	1.163432
38.0	1.163432
39.0	1.163432
40.0	1.163432
41.0	1.163432
42.0	1.163432
43.0	1.163432
44.0	1.163432
45.0	1.163432
46.0	1.163432
47.0	1.163432
48.0	1.163432
49.0	1.163432
50.0	1.163432
51.0	1.163432
52.0	1.163432
53.0	1.163432
54.0	1.163432
55.0	1.163432
56.0	1.163432
57.0	1.163432
58.0	1.163432
59.0	1.163432
60.0	1.163432
61.0	1.163432
62.0	1.163432
63.0	1.163432
64.0	1.163432
65.0	1.163432
66.0	1.163432
67.0	1.163432
68.0	1.163432
69.0	1.163432
70.0	1.163432
71.0	1.163432
72.0	1.163432
73.0	1.163432
74.0	1.163432
75.0	1.163432
76.0	1.163432
77.0	1.163432
78.0	1.163432
79.0	1.163432
80.0	1.163432
81.0	1.163432
82.0	1.163432
83.0	1.163432
84.0	1.163432
85.0	1.163432
86.0	1.163432
87.0	1.163432
88.0	1.163432
89.0	1.163432
90.0	1.163432
91.0	1.163432
92.0	1.163432
93.0	1.163432
94.0	1.163432
95.0	1.163432
96.0	1.163432
97.0	1.163432
98.0	1.163432
99.0	1.163432
100.0	1.163432