## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MK-XX4.2x36mers.hg38-male.unique.bam] OUTPUT=MK-XX4.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=MK-XX4.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Nov 06 08:25:55 PST 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	3243460	2289712	0	72212	37413	0.022264	146616625

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011541
2.0	2.00095
3.0	2.968712
4.0	3.9153
5.0	4.841178
6.0	5.746798
7.0	6.632603
8.0	7.499029
9.0	8.346497
10.0	9.175424
11.0	9.986214
12.0	10.779265
13.0	11.554965
14.0	12.313693
15.0	13.055821
16.0	13.781712
17.0	14.49172
18.0	15.186195
19.0	15.865475
20.0	16.529892
21.0	17.179773
22.0	17.815435
23.0	18.43719
24.0	19.045341
25.0	19.640186
26.0	20.222016
27.0	20.791116
28.0	21.347765
29.0	21.892235
30.0	22.424793
31.0	22.945698
32.0	23.455207
33.0	23.953568
34.0	24.441025
35.0	24.917817
36.0	25.384177
37.0	25.840334
38.0	26.28651
39.0	26.722925
40.0	27.149791
41.0	27.567317
42.0	27.975709
43.0	28.375165
44.0	28.765882
45.0	29.148049
46.0	29.521856
47.0	29.887484
48.0	30.245112
49.0	30.594915
50.0	30.937066
51.0	31.27173
52.0	31.599072
53.0	31.919252
54.0	32.232427
55.0	32.53875
56.0	32.83837
57.0	33.131436
58.0	33.418089
59.0	33.69847
60.0	33.972717
61.0	34.240964
62.0	34.503342
63.0	34.759979
64.0	35.011001
65.0	35.256531
66.0	35.496689
67.0	35.731593
68.0	35.961357
69.0	36.186094
70.0	36.405914
71.0	36.620924
72.0	36.83123
73.0	37.036935
74.0	37.23814
75.0	37.434942
76.0	37.627438
77.0	37.815722
78.0	37.999887
79.0	38.180023
80.0	38.356218
81.0	38.528557
82.0	38.697126
83.0	38.862007
84.0	39.02328
85.0	39.181025
86.0	39.335318
87.0	39.486236
88.0	39.633851
89.0	39.778237
90.0	39.919464
91.0	40.057601
92.0	40.192716
93.0	40.324874
94.0	40.454141
95.0	40.58058
96.0	40.704252
97.0	40.825219
98.0	40.943539
99.0	41.05927
100.0	41.172469