/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4286-HFF_4hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4286-HFF_4hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4287-HFF_12hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4287-HFF_12hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4288-HFF_24hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4288-HFF_24hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4289-HFF_48hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4289-HFF_48hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4290-HFF_72hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4290-HFF_72hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4291-HFF_96hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4291-HFF_96hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4292-HFF_120hpi_noPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4292-HFF_120hpi_noPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4293-HFF_72hpi_1hpiPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4293-HFF_72hpi_1hpiPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4294-HFF_72hpi_48hpiPFA_1_Input.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4294-HFF_72hpi_48hpiPFA_1_Input.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4295-HFF_4hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4295-HFF_4hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4296-HFF_12hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4296-HFF_12hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4297-HFF_24hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4297-HFF_24hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4298-HFF_48hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4298-HFF_48hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4299-HFF_72hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4299-HFF_72hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4300-HFF_96hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4300-HFF_96hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4301-HFF_120hpi_noPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4301-HFF_120hpi_noPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4302-HFF_72hpi_1hpiPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4302-HFF_72hpi_1hpiPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4303-HFF_72hpi_48hpiPFA_1_CTCF.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4303-HFF_72hpi_48hpiPFA_1_CTCF.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4304-HFF_4hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4304-HFF_4hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4305-HFF_12hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4305-HFF_12hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4306-HFF_24hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4306-HFF_24hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4307-HFF_48hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4307-HFF_48hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4308-HFF_72hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4308-HFF_72hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4309-HFF_96hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4309-HFF_96hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4310-HFF_120hpi_noPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4310-HFF_120hpi_noPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4313-HFF_4hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4313-HFF_4hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4314-HFF_12hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4314-HFF_12hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4315-HFF_24hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4315-HFF_24hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4316-HFF_48hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4316-HFF_48hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4317-HFF_72hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4317-HFF_72hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4318-HFF_96hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4318-HFF_96hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4319-HFF_120hpi_noPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4319-HFF_120hpi_noPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4320-HFF_72hpi_1hpiPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4320-HFF_72hpi_1hpiPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4321-HFF_72hpi_48hpiPFA_1_4H8.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4321-HFF_72hpi_48hpiPFA_1_4H8.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4322-HFF_4hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4322-HFF_4hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4323-HFF_12hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4323-HFF_12hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4324-HFF_24hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4324-HFF_24hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4325-HFF_72hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4325-HFF_72hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4326-HFF_96hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4326-HFF_96hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4327-HFF_120hpi_noPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4327-HFF_120hpi_noPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4330-HFF_4hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4330-HFF_4hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4331-HFF_12hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4331-HFF_12hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4332-HFF_24hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4332-HFF_24hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4333-HFF_48hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4333-HFF_48hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4334-HFF_72hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4334-HFF_72hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4335-HFF_96hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4335-HFF_96hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4336-HFF_120hpi_noPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4336-HFF_120hpi_noPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4339-HFF_4hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4339-HFF_4hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4340-HFF_12hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4340-HFF_12hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4341-HFF_24hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4341-HFF_24hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4342-HFF_48hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4342-HFF_48hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4343-HFF_72hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4343-HFF_72hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4344-HFF_96hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4344-HFF_96hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4345-HFF_120hpi_noPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4345-HFF_120hpi_noPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.merlin.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.hg38-male.1x36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools index L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.merlin.1x36mers.unique.bam
