python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4286-HFF_4hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4286-HFF_4hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4286-HFF_4hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4286-HFF_4hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4287-HFF_12hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4287-HFF_12hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4287-HFF_12hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4287-HFF_12hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4288-HFF_24hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4288-HFF_24hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4288-HFF_24hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4288-HFF_24hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4289-HFF_48hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4289-HFF_48hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4289-HFF_48hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4289-HFF_48hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4290-HFF_72hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4290-HFF_72hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4290-HFF_72hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4290-HFF_72hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4291-HFF_96hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4291-HFF_96hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4291-HFF_96hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4291-HFF_96hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4292-HFF_120hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4292-HFF_120hpi_noPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4292-HFF_120hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4292-HFF_120hpi_noPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4293-HFF_72hpi_1hpiPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4293-HFF_72hpi_1hpiPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4293-HFF_72hpi_1hpiPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4293-HFF_72hpi_1hpiPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4294-HFF_72hpi_48hpiPFA_1_Input.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4294-HFF_72hpi_48hpiPFA_1_Input.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4294-HFF_72hpi_48hpiPFA_1_Input.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4294-HFF_72hpi_48hpiPFA_1_Input.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4295-HFF_4hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4295-HFF_4hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4295-HFF_4hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4295-HFF_4hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4296-HFF_12hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4296-HFF_12hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4296-HFF_12hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4296-HFF_12hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4297-HFF_24hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4297-HFF_24hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4297-HFF_24hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4297-HFF_24hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4298-HFF_48hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4298-HFF_48hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4298-HFF_48hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4298-HFF_48hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4299-HFF_72hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4299-HFF_72hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4299-HFF_72hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4299-HFF_72hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4300-HFF_96hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4300-HFF_96hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4300-HFF_96hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4300-HFF_96hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4301-HFF_120hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4301-HFF_120hpi_noPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4301-HFF_120hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4301-HFF_120hpi_noPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4302-HFF_72hpi_1hpiPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4302-HFF_72hpi_1hpiPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4302-HFF_72hpi_1hpiPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4302-HFF_72hpi_1hpiPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4303-HFF_72hpi_48hpiPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4303-HFF_72hpi_48hpiPFA_1_CTCF.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4303-HFF_72hpi_48hpiPFA_1_CTCF.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4303-HFF_72hpi_48hpiPFA_1_CTCF.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4304-HFF_4hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4304-HFF_4hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4304-HFF_4hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4304-HFF_4hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4305-HFF_12hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4305-HFF_12hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4305-HFF_12hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4305-HFF_12hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4306-HFF_24hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4306-HFF_24hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4306-HFF_24hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4306-HFF_24hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4307-HFF_48hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4307-HFF_48hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4307-HFF_48hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4307-HFF_48hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4308-HFF_72hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4308-HFF_72hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4308-HFF_72hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4308-HFF_72hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4309-HFF_96hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4309-HFF_96hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4309-HFF_96hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4309-HFF_96hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4310-HFF_120hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4310-HFF_120hpi_noPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4310-HFF_120hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4310-HFF_120hpi_noPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4311-HFF_72hpi_1hpiPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4312-HFF_72hpi_48hpiPFA_1_H3K27ac.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4313-HFF_4hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4313-HFF_4hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4313-HFF_4hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4313-HFF_4hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4314-HFF_12hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4314-HFF_12hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4314-HFF_12hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4314-HFF_12hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4315-HFF_24hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4315-HFF_24hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4315-HFF_24hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4315-HFF_24hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4316-HFF_48hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4316-HFF_48hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4316-HFF_48hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4316-HFF_48hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4317-HFF_72hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4317-HFF_72hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4317-HFF_72hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4317-HFF_72hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4318-HFF_96hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4318-HFF_96hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4318-HFF_96hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4318-HFF_96hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4319-HFF_120hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4319-HFF_120hpi_noPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4319-HFF_120hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4319-HFF_120hpi_noPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4320-HFF_72hpi_1hpiPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4320-HFF_72hpi_1hpiPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4320-HFF_72hpi_1hpiPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4320-HFF_72hpi_1hpiPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4321-HFF_72hpi_48hpiPFA_1_4H8.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4321-HFF_72hpi_48hpiPFA_1_4H8.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4321-HFF_72hpi_48hpiPFA_1_4H8.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4321-HFF_72hpi_48hpiPFA_1_4H8.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4322-HFF_4hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4322-HFF_4hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4322-HFF_4hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4322-HFF_4hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4323-HFF_12hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4323-HFF_12hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4323-HFF_12hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4323-HFF_12hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4324-HFF_24hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4324-HFF_24hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4324-HFF_24hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4324-HFF_24hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4325-HFF_72hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4325-HFF_72hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4325-HFF_72hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4325-HFF_72hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4326-HFF_96hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4326-HFF_96hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4326-HFF_96hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4326-HFF_96hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4327-HFF_120hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4327-HFF_120hpi_noPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4327-HFF_120hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4327-HFF_120hpi_noPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4328-HFF_72hpi_1hpiPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4329-HFF_72hpi_48hpiPFA_1_H3K4me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4330-HFF_4hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4330-HFF_4hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4330-HFF_4hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4330-HFF_4hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4331-HFF_12hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4331-HFF_12hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4331-HFF_12hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4331-HFF_12hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4332-HFF_24hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4332-HFF_24hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4332-HFF_24hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4332-HFF_24hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4333-HFF_48hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4333-HFF_48hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4333-HFF_48hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4333-HFF_48hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4334-HFF_72hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4334-HFF_72hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4334-HFF_72hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4334-HFF_72hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4335-HFF_96hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4335-HFF_96hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4335-HFF_96hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4335-HFF_96hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4336-HFF_120hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4336-HFF_120hpi_noPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4336-HFF_120hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4336-HFF_120hpi_noPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4337-HFF_72hpi_1hpiPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4338-HFF_72hpi_48hpiPFA_1_H3K9me3.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4339-HFF_4hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4339-HFF_4hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4339-HFF_4hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4339-HFF_4hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4340-HFF_12hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4340-HFF_12hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4340-HFF_12hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4340-HFF_12hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4341-HFF_24hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4341-HFF_24hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4341-HFF_24hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4341-HFF_24hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4342-HFF_48hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4342-HFF_48hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4342-HFF_48hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4342-HFF_48hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4343-HFF_72hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4343-HFF_72hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4343-HFF_72hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4343-HFF_72hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4344-HFF_96hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4344-HFF_96hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4344-HFF_96hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4344-HFF_96hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4345-HFF_120hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4345-HFF_120hpi_noPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4345-HFF_120hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4345-HFF_120hpi_noPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4346-HFF_72hpi_1hpiPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.hg38-male.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Viruses/HCMV/merlin.chrom.sizes L4347-HFF_72hpi_48hpiPFA_1_H3K4me1.merlin.2x36mers.unique.dedup.InsertLength -uniqueBAM -normalize