python ~/code/bedRPKMfromBAM.py L3595-Hanbang_HS_NRSF.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3595-Hanbang_HS_NRSF.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3595-Hanbang_HS_NRSF.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3596-Hanbang_AS_NRSF.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3596-Hanbang_AS_NRSF.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3596-Hanbang_AS_NRSF.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3597-Hanbang_HEK_OE_NRSF.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3597-Hanbang_HEK_OE_NRSF.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3597-Hanbang_HEK_OE_NRSF.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3602-ChIRP_P.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3602-ChIRP_P.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3602-ChIRP_P.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3603-ChIRP_N.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3603-ChIRP_N.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3603-ChIRP_N.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3604-ChIRP_odd.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3604-ChIRP_odd.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3604-ChIRP_odd.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3605-ChIRP_even.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3605-ChIRP_even.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3605-ChIRP_even.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3616-PT3_ChIRP_odd.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3616-PT3_ChIRP_odd.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3616-PT3_ChIRP_odd.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM
python ~/code/bedRPKMfromBAM.py L3617-PT3_ChIRP_even.1x50mers.unique.MACS-2.1.0_peaks.narrowPeak.gz 0 L3617-PT3_ChIRP_even.1x50mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes L3617-PT3_ChIRP_even.1x50mers.unique.MACS-2.1.0_peaks.RPM -RPM